PoplarV1, Main, Exploration, bibRecord, 002E63

Genome-wide analysis of BURP domain-containing genes in Populus trichocarpa.

Identifieur interne : 002E63 ( Main/Exploration ); précédent : 002E62; suivant : 002E64

Genome-wide analysis of BURP domain-containing genes in Populus trichocarpa.

Auteurs : Yuanhua Shao [République populaire de Chine] ; Guo Wei ; Ling Wang ; Qing Dong ; Yang Zhao ; Beijiu Chen ; Yan Xiang

Source :

Journal of integrative plant biology [ 1744-7909 ] ; 2011.

RBID : pubmed:21767343

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Motifs (MeSH), Amino Acid Sequence (MeSH), Chromosomes, Plant (genetics), Databases, Genetic (MeSH), Expressed Sequence Tags (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (genetics), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Physical Chromosome Mapping (MeSH), Plant Proteins (chemistry), Plant Proteins (classification), Plant Proteins (genetics), Populus (genetics), Protein Structure, Tertiary (MeSH), Sequence Alignment (MeSH), Sequence Analysis, Protein (MeSH), Stress, Physiological (genetics).
MESH :
- chemical , chemistry : Plant Proteins.
- chemical , classification : Plant Proteins.
- genetics : Chromosomes, Plant, Genes, Plant, Plant Proteins, Populus, Stress, Physiological.
- Amino Acid Motifs, Amino Acid Sequence, Databases, Genetic, Expressed Sequence Tags, Gene Expression Profiling, Gene Expression Regulation, Plant, Molecular Sequence Data, Phylogeny, Physical Chromosome Mapping, Protein Structure, Tertiary, Sequence Alignment, Sequence Analysis, Protein.

Abstract

BURP domain-containing proteins have a conserved structure and are found extensively in plants. The functions of the proteins in this family are diverse, but remain unknown in Populus trichocarpa. In the present study, a complete genome of P. trichocarpa was analyzed bioinformatically. A total of 18 BURP family genes, named PtBURPs, were identified and characterized according to their physical positions on the P. trichocarpa chromosomes. A phylogenetic tree was generated from alignments of PtBURP protein sequences, while phylogenetic relationships were also examined between PtBURPs and BURP family genes in other plants, including rice, soybean, maize and sorghum. BURP genes in P. trichocarpa were classified into five classes, namely PG1β-like, BNM2-like, USP-like, RD22-like and BURP V. The multiple expectation maximization for motif elicitation (MEME) and multiple protein sequence alignments of PtBURPs were also performed. Results from the transcript level analyses of 10 PtBURP genes under different stress conditions revealed the expression patterns in poplar and led to a discussion on genome duplication and evolution, expression profiles and function of PtBURP genes.

DOI: 10.1111/j.1744-7909.2011.01068.x
PubMed: 21767343

Affiliations:

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Le document en format XML

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<author><name sortKey="Zhao, Yang" sort="Zhao, Yang" uniqKey="Zhao Y" first="Yang" last="Zhao">Yang Zhao</name>
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<term>Databases, Genetic (MeSH)</term>
<term>Expressed Sequence Tags (MeSH)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genes, Plant (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Phylogeny (MeSH)</term>
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<term>Plant Proteins (classification)</term>
<term>Plant Proteins (genetics)</term>
<term>Populus (genetics)</term>
<term>Protein Structure, Tertiary (MeSH)</term>
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<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Analyse de séquence de protéine (MeSH)</term>
<term>Bases de données génétiques (MeSH)</term>
<term>Cartographie physique de chromosome (MeSH)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Gènes de plante (génétique)</term>
<term>Motifs d'acides aminés (MeSH)</term>
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<term>Populus (génétique)</term>
<term>Protéines végétales (classification)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Stress physiologique (génétique)</term>
<term>Structure tertiaire des protéines (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Étiquettes de séquences exprimées (MeSH)</term>
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<term>Plant Proteins</term>
<term>Populus</term>
<term>Stress, Physiological</term>
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<term>Physical Chromosome Mapping</term>
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<term>Sequence Analysis, Protein</term>
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<term>Bases de données génétiques</term>
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<front><div type="abstract" xml:lang="en">BURP domain-containing proteins have a conserved structure and are found extensively in plants. The functions of the proteins in this family are diverse, but remain unknown in Populus trichocarpa. In the present study, a complete genome of P. trichocarpa was analyzed bioinformatically. A total of 18 BURP family genes, named PtBURPs, were identified and characterized according to their physical positions on the P. trichocarpa chromosomes. A phylogenetic tree was generated from alignments of PtBURP protein sequences, while phylogenetic relationships were also examined between PtBURPs and BURP family genes in other plants, including rice, soybean, maize and sorghum. BURP genes in P. trichocarpa were classified into five classes, namely PG1β-like, BNM2-like, USP-like, RD22-like and BURP V. The multiple expectation maximization for motif elicitation (MEME) and multiple protein sequence alignments of PtBURPs were also performed. Results from the transcript level analyses of 10 PtBURP genes under different stress conditions revealed the expression patterns in poplar and led to a discussion on genome duplication and evolution, expression profiles and function of PtBURP genes.</div>
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Genome-wide analysis of BURP domain-containing genes in Populus trichocarpa.

Genome-wide analysis of BURP domain-containing genes in Populus trichocarpa.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki